Package: CohortSurvival 0.6.0

CohortSurvival: Estimate Survival from Common Data Model Cohorts

Estimate survival using data mapped to the Observational Medical Outcomes Partnership common data model. Survival can be estimated based on user-defined study cohorts.

Authors:Edward Burn [aut, cre], Kim López-Güell [aut], Marti Catala [aut], Xintong Li [aut], Danielle Newby [aut], Nuria Mercade-Besora [aut]

CohortSurvival_0.6.0.tar.gz
CohortSurvival_0.6.0.zip(r-4.5)CohortSurvival_0.6.0.zip(r-4.4)CohortSurvival_0.5.2.zip(r-4.3)
CohortSurvival_0.6.0.tgz(r-4.4-any)CohortSurvival_0.5.2.tgz(r-4.3-any)
CohortSurvival_0.6.0.tar.gz(r-4.5-noble)CohortSurvival_0.6.0.tar.gz(r-4.4-noble)
CohortSurvival_0.6.0.tgz(r-4.4-emscripten)CohortSurvival_0.6.0.tgz(r-4.3-emscripten)
CohortSurvival.pdf |CohortSurvival.html✨
CohortSurvival/json (API)

# Install 'CohortSurvival' in R:
install.packages('CohortSurvival', repos = c('https://edward-burn.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/darwin-eu-dev/cohortsurvival/issues

On CRAN:

4.20 score 15 scripts 327 downloads 25 exports 58 dependencies

Last updated 11 days agofrom:dfad9dfe37. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 11 2024
R-4.5-winOKNov 11 2024
R-4.5-linuxOKNov 11 2024
R-4.4-winOKNov 11 2024
R-4.4-macOKNov 11 2024
R-4.3-winOKOct 28 2024
R-4.3-macOKOct 28 2024

Exports::=.data%>%addCohortSurvivaladdCompetingRiskCohortSurvivalas_labelas_nameasSurvivalResultattritionbindcohortCodelistcohortCountenquoenquosestimateCompetingRiskSurvivalestimateSingleEventSurvivalexportSummarisedResultgenerateDeathCohortSetimportSummarisedResultmockMGUS2cdmoptionsTableSurvivalplotSurvivalsettingssuppresstableSurvival

Dependencies:backportsbitbit64blobbroomCDMConnectorcheckmateclicliprcolorspacecpp11crayonDBIdbplyrdiffobjdplyrfansifarverfsgenericsgluehmsjsonlitelabelinglatticelifecyclelubridatemagrittrMatrixmunsellomopgenericsPatientProfilespillarpkgconfigprettyunitsprogresspurrrR6RColorBrewerreadrrlangscalessnakecasestringistringrsurvivaltibbletidyrtidyselecttimechangetzdbutf8vctrsviridisLitevisOmopResultsvroomwaldowithr

Competing risk survival

Rendered froma02_Competing_risk_survival.Rmdusingknitr::rmarkdownon Nov 11 2024.

Last update: 2024-11-10
Started: 2023-12-08

Further survival analyses

Rendered froma03_Further_survival_analyses.Rmdusingknitr::rmarkdownon Nov 11 2024.

Last update: 2024-11-10
Started: 2024-05-07

Single outcome event of interest

Rendered froma01_Single_event_of_interest.Rmdusingknitr::rmarkdownon Nov 11 2024.

Last update: 2024-11-10
Started: 2023-12-08